Dear Anupam
You please check the states rule on Leave and Holidays in which your organization is operating. If state does not have any rule on Leave and Holidays, you should not mark absent for weekly off i.e. Sunday. As Punjab State rules on Leave and Holidays says no leave will be adjusted against weekly off falls in the intervening period of leave.
As far as Casual leave is concerned normally state rule described 7 days CL in a calendar year. Accordingly you can grant 1 CL after every 52 days even to a probationer.