As far as the question of deducting the house rent from staff salaries is concerned, you can deduct the amount for the house rent accommodation provided by the employer, subject to the conditions of section 2(d) of the Payment of Wages Act. The section is reproduced below:
2(d) Deductions for house-accommodation supplied by the employer
This includes accommodation provided by the Government or any housing board set up under any law currently in force (whether the Government or the board is the employer or not) or any other authority engaged in the business of subsidizing house-accommodation, which may be specified by the State Government through notification in the Official Gazette.
Housing accommodation is an additional amenity provided by the employer, in addition to the minimum wages set by the State Government; therefore, the employer is empowered to deduct the house rent amount from the staff's salary.
Regards,
R B Rao
Advocate