Dear Sarita,
First of all you should not have calculated his 3 days salary as he was new employee so his PF contribution issue would not have arise.
Now since you have allotted him PF A/c. no., pay 3 days PF Contribution into that account if you have actually calculated his salary and debited to salary account. If you have not calculated his salary, put remark in ECR joined & left with 0 contribution.
Dear Amitkumar,
If an employee put less than 6 months PF Membership, he/she will not get any amount from the Pension Fund account, however he can request for Pension Certificate.
On PF withdrawal the member will get his full 12% employee's contribution and from employer's share he will get 12 - 8.33 (Pension Contr.)=3.67% thus the member will get total contribution of 15.67%.
Suresh