Hi Nina,
I'll divide your query into two parts:
One - Is deduction of the employee's share legal?
Yes, according to the EPF Act, the employer has to deduct the employee's share from the pay.
Second - Can the employer deduct the employer's contribution from the pay?
No, the employer cannot deduct the employer's contribution from the pay, whether the employee is on probation, temporary, or permanent basis. It is a violation of the Act. Please refer to Section 31 of the EPF Scheme 1952.
Hope this clears your confusion.
Regards,
H. R. Shah