Dear Anirudh,
Buy a car in the individual's name and let the company pay the EMI for the same. This way, the company can show all the expenses related to the car as business expenses. When the company takes the car in the name of the individual employee, they need not pay higher corporate tax. Also, don't make the car part of the employee's CTC. Thus, after three years, the company can sell the car and show depreciation in the books of accounts.
I am not very good in tax and finance, so kindly do verify the above idea with a finance person before you even think of working on the above idea.