Once a warrant of arrest is issued by the Enforcement Officer, payment of the amount in a latter date will not lead to escape the arrest since the warrant is for non payment of dues in time ( every month by 15th).
regarding the problem of non-payment you can approach the PF office as to how long the company has been remitting the amount. If they are not remitting your deductions, then you are not getting your due. Check with the PF office and once you find any discrepensies you can go for legal details.
I hope that your problems are solved